Basic Statistics
Measure | Value |
---|---|
Filename | DRR024934_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7990419 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13835 | 0.17314486261609058 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11061 | 0.13842828517503275 | No Hit |
ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA | 8454 | 0.10580171077386555 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14405 | 0.0 | 45.464798 | 1 |
GTATCAA | 24435 | 0.0 | 40.867645 | 1 |
TCAACGC | 32375 | 0.0 | 30.722483 | 4 |
ATCAACG | 32555 | 0.0 | 30.553953 | 3 |
TATCAAC | 33495 | 0.0 | 29.70114 | 2 |
CAACGCA | 36775 | 0.0 | 27.07306 | 5 |
AACGCAG | 37710 | 0.0 | 26.425734 | 6 |
ACGCAGA | 38905 | 0.0 | 25.238867 | 7 |
GTACATG | 36745 | 0.0 | 25.21888 | 1 |
CGCAGAG | 40240 | 0.0 | 24.167772 | 8 |
TACATGG | 36730 | 0.0 | 23.577955 | 2 |
GCAGAGT | 41895 | 0.0 | 22.483797 | 9 |
ACATGGG | 38525 | 0.0 | 21.877974 | 3 |
GTGGTAT | 7520 | 0.0 | 20.319027 | 1 |
AGAGTAC | 37930 | 0.0 | 19.64152 | 10-11 |
CATGGGG | 27875 | 0.0 | 19.10581 | 4 |
GAGTACA | 26585 | 0.0 | 18.922762 | 1 |
CAGAGTA | 40590 | 0.0 | 18.904398 | 10-11 |
GTACTTT | 20470 | 0.0 | 18.837774 | 14-15 |
GAGTACT | 21005 | 0.0 | 18.727558 | 12-13 |