Basic Statistics
Measure | Value |
---|---|
Filename | DRR024931_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3388561 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11783 | 0.34772872614658557 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10663 | 0.31467634786565746 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7085 | 0.20908580367890675 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8095 | 0.0 | 48.92597 | 1 |
GTATCAA | 13530 | 0.0 | 36.329773 | 1 |
ATCAACG | 16895 | 0.0 | 28.800627 | 3 |
TCAACGC | 17045 | 0.0 | 28.543804 | 4 |
TATCAAC | 17360 | 0.0 | 28.056261 | 2 |
CAACGCA | 17605 | 0.0 | 27.66255 | 5 |
AACGCAG | 18235 | 0.0 | 26.784176 | 6 |
ACGCAGA | 20835 | 0.0 | 23.259909 | 7 |
GTACATG | 11070 | 0.0 | 23.157574 | 1 |
CGCAGAG | 20965 | 0.0 | 23.0012 | 8 |
TAGACCG | 165 | 2.6626203E-6 | 22.791584 | 5 |
TACATGG | 11130 | 0.0 | 21.964836 | 2 |
TACCTGG | 2735 | 0.0 | 21.830624 | 2 |
GCAGAGT | 22130 | 0.0 | 21.259384 | 9 |
GAGTACT | 14910 | 0.0 | 20.676914 | 12-13 |
ACATGGG | 11615 | 0.0 | 20.197662 | 3 |
AGAGTAC | 19800 | 0.0 | 20.163567 | 10-11 |
GTGGTAT | 4005 | 0.0 | 19.731085 | 1 |
AGTACTT | 15120 | 0.0 | 19.503899 | 12-13 |
CAGAGTA | 21850 | 0.0 | 19.304216 | 10-11 |