Basic Statistics
Measure | Value |
---|---|
Filename | DRR024925_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3360250 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11536 | 0.34330778959898817 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10026 | 0.2983706569451678 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6740 | 0.20058031396473475 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6325 | 0.0 | 58.224922 | 1 |
GTATCAA | 11720 | 0.0 | 41.294807 | 1 |
ATCAACG | 15060 | 0.0 | 31.588608 | 3 |
TCAACGC | 15115 | 0.0 | 31.53352 | 4 |
TATCAAC | 15675 | 0.0 | 30.52918 | 2 |
CAACGCA | 15785 | 0.0 | 30.254625 | 5 |
AACGCAG | 16420 | 0.0 | 29.284992 | 6 |
GTGGTAT | 2735 | 0.0 | 28.202929 | 1 |
TGGTATC | 2725 | 0.0 | 27.083706 | 2 |
TACCTGG | 2830 | 0.0 | 26.743263 | 2 |
TATAACG | 330 | 0.0 | 25.640913 | 2 |
ACGCAGA | 18550 | 0.0 | 25.59103 | 7 |
CGCAGAG | 18750 | 0.0 | 25.267923 | 8 |
ACAACGC | 640 | 0.0 | 24.238674 | 3 |
GTACCTG | 3205 | 0.0 | 23.773584 | 1 |
GTACATG | 10215 | 0.0 | 23.712458 | 1 |
GCAGAGT | 19965 | 0.0 | 23.306452 | 9 |
TACATGG | 10040 | 0.0 | 23.129604 | 2 |
TAACGCA | 410 | 0.0 | 21.782734 | 4 |
ACATGGG | 10455 | 0.0 | 21.492098 | 3 |