Basic Statistics
Measure | Value |
---|---|
Filename | DRR024914_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4518667 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11585 | 0.2563809194171644 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9592 | 0.21227499171769018 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5683 | 0.125767178683448 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7295 | 0.0 | 55.682484 | 1 |
GTATCAA | 13695 | 0.0 | 42.191017 | 1 |
ATCAACG | 16495 | 0.0 | 34.59818 | 3 |
TCAACGC | 16565 | 0.0 | 34.449306 | 4 |
TATCAAC | 17465 | 0.0 | 32.7337 | 2 |
CAACGCA | 17405 | 0.0 | 32.706055 | 5 |
AACGCAG | 18205 | 0.0 | 31.369675 | 6 |
ACGCAGA | 20300 | 0.0 | 27.692333 | 7 |
CGCAGAG | 20370 | 0.0 | 27.435345 | 8 |
GTACATG | 14550 | 0.0 | 26.657604 | 1 |
GTGGTAT | 3250 | 0.0 | 25.894041 | 1 |
TACATGG | 14155 | 0.0 | 25.076517 | 2 |
GCAGAGT | 21940 | 0.0 | 24.872255 | 9 |
ACATGGG | 14655 | 0.0 | 23.961924 | 3 |
TGGTATC | 3305 | 0.0 | 23.61385 | 2 |
TACCTGG | 3565 | 0.0 | 22.023537 | 2 |
GTACCTG | 3900 | 0.0 | 21.698915 | 1 |
GAGTACT | 15080 | 0.0 | 21.270262 | 12-13 |
CAGAGTA | 21945 | 0.0 | 20.679321 | 10-11 |
CATGGGG | 8540 | 0.0 | 20.310553 | 4 |