FastQCFastQC Report
Thu 2 Jun 2016
DRR024914_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameDRR024914_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4518667
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT115850.2563809194171644No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT95920.21227499171769018No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT56830.125767178683448No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA72950.055.6824841
GTATCAA136950.042.1910171
ATCAACG164950.034.598183
TCAACGC165650.034.4493064
TATCAAC174650.032.73372
CAACGCA174050.032.7060555
AACGCAG182050.031.3696756
ACGCAGA203000.027.6923337
CGCAGAG203700.027.4353458
GTACATG145500.026.6576041
GTGGTAT32500.025.8940411
TACATGG141550.025.0765172
GCAGAGT219400.024.8722559
ACATGGG146550.023.9619243
TGGTATC33050.023.613852
TACCTGG35650.022.0235372
GTACCTG39000.021.6989151
GAGTACT150800.021.27026212-13
CAGAGTA219450.020.67932110-11
CATGGGG85400.020.3105534