Basic Statistics
Measure | Value |
---|---|
Filename | DRR024907_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3369290 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11723 | 0.34793680567716045 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9600 | 0.28492649786750324 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5847 | 0.17353804510742618 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7010 | 0.0 | 51.91492 | 1 |
GTATCAA | 12295 | 0.0 | 40.192356 | 1 |
TACCTGG | 3240 | 0.0 | 35.263912 | 2 |
GTACCTG | 3680 | 0.0 | 32.453022 | 1 |
ATCAACG | 15180 | 0.0 | 32.240597 | 3 |
TCAACGC | 15355 | 0.0 | 31.93202 | 4 |
TATCAAC | 15650 | 0.0 | 31.305645 | 2 |
CAACGCA | 16110 | 0.0 | 30.552692 | 5 |
AACGCAG | 16755 | 0.0 | 29.512444 | 6 |
GTGGTAT | 3015 | 0.0 | 28.382675 | 1 |
ACCTGGG | 4020 | 0.0 | 27.71701 | 3 |
GTACATG | 13570 | 0.0 | 26.748947 | 1 |
ACGCAGA | 18930 | 0.0 | 25.798758 | 7 |
CGCAGAG | 19070 | 0.0 | 25.412176 | 8 |
TACATGG | 13635 | 0.0 | 25.31105 | 2 |
TGGTATC | 3310 | 0.0 | 25.14285 | 2 |
TATAACG | 370 | 0.0 | 24.144663 | 2 |
ACATGGG | 13965 | 0.0 | 23.633078 | 3 |
GCAGAGT | 20360 | 0.0 | 23.271086 | 9 |
ACAACGC | 810 | 0.0 | 21.475378 | 3 |