Basic Statistics
Measure | Value |
---|---|
Filename | DRR024907_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3369290 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13315 | 0.39518711657352146 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11409 | 0.33861733480941086 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7813 | 0.23188861748320863 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6990 | 0.0 | 53.694553 | 1 |
GTATCAA | 12650 | 0.0 | 41.716404 | 1 |
TACCTGG | 3365 | 0.0 | 35.905346 | 2 |
ATCAACG | 16480 | 0.0 | 31.522175 | 3 |
TCAACGC | 16780 | 0.0 | 30.978802 | 4 |
GTGGTAT | 3040 | 0.0 | 30.942896 | 1 |
TATAACG | 380 | 0.0 | 30.929117 | 2 |
TATCAAC | 16930 | 0.0 | 30.906462 | 2 |
GTACCTG | 4005 | 0.0 | 30.885721 | 1 |
CAACGCA | 17425 | 0.0 | 29.966965 | 5 |
AACGCAG | 18180 | 0.0 | 28.800022 | 6 |
ACCTGGG | 4085 | 0.0 | 28.31093 | 3 |
TGGTATC | 3320 | 0.0 | 27.612617 | 2 |
ACGCAGA | 20755 | 0.0 | 24.931034 | 7 |
CGCAGAG | 20815 | 0.0 | 24.745907 | 8 |
TAACGCA | 485 | 0.0 | 24.227007 | 4 |
GTACATG | 13235 | 0.0 | 24.165152 | 1 |
TACATGG | 13280 | 0.0 | 23.364523 | 2 |
ATAACGC | 565 | 0.0 | 22.466034 | 3 |
GCAGAGT | 22300 | 0.0 | 22.44471 | 9 |