FastQCFastQC Report
Thu 2 Jun 2016
DRR024897_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameDRR024897_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2461262
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT90330.367006844456218No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT74830.30403102148410044No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT48560.19729715893716313No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA50750.052.7973861
TACCTGG28550.048.5723952
GTACCTG33600.042.3913231
ACAACGC5950.041.0786253
TATAACG2900.040.5243072
ACCTGGG33400.040.2484443
GTATCAA94700.039.2645031
GTACCGG2300.036.789031
TAACGCA3850.032.96214
ATCAACG115000.032.0849463
TCAACGC117500.031.5210174
CAACGCA122600.030.3260275
TATCAAC122150.030.1329652
AACGCAG128500.029.1165166
GTACAAC8700.028.0968531
GTGGTAT22950.027.4470521
ACGCAGA143650.025.6203847
CGCAGAG143400.025.4028268
GTACATG90800.025.3678591
ATAACGC5950.025.2791523