Basic Statistics
Measure | Value |
---|---|
Filename | DRR024897_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2461262 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9033 | 0.367006844456218 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7483 | 0.30403102148410044 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4856 | 0.19729715893716313 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5075 | 0.0 | 52.797386 | 1 |
TACCTGG | 2855 | 0.0 | 48.572395 | 2 |
GTACCTG | 3360 | 0.0 | 42.391323 | 1 |
ACAACGC | 595 | 0.0 | 41.078625 | 3 |
TATAACG | 290 | 0.0 | 40.524307 | 2 |
ACCTGGG | 3340 | 0.0 | 40.248444 | 3 |
GTATCAA | 9470 | 0.0 | 39.264503 | 1 |
GTACCGG | 230 | 0.0 | 36.78903 | 1 |
TAACGCA | 385 | 0.0 | 32.9621 | 4 |
ATCAACG | 11500 | 0.0 | 32.084946 | 3 |
TCAACGC | 11750 | 0.0 | 31.521017 | 4 |
CAACGCA | 12260 | 0.0 | 30.326027 | 5 |
TATCAAC | 12215 | 0.0 | 30.132965 | 2 |
AACGCAG | 12850 | 0.0 | 29.116516 | 6 |
GTACAAC | 870 | 0.0 | 28.096853 | 1 |
GTGGTAT | 2295 | 0.0 | 27.447052 | 1 |
ACGCAGA | 14365 | 0.0 | 25.620384 | 7 |
CGCAGAG | 14340 | 0.0 | 25.402826 | 8 |
GTACATG | 9080 | 0.0 | 25.367859 | 1 |
ATAACGC | 595 | 0.0 | 25.279152 | 3 |