Basic Statistics
Measure | Value |
---|---|
Filename | DRR024892_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3311924 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9181 | 0.2772104673899522 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7440 | 0.22464283600710644 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4817 | 0.14544415874277308 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6310 | 0.0 | 52.82639 | 1 |
GTATCAA | 11190 | 0.0 | 40.46041 | 1 |
TACCTGG | 3205 | 0.0 | 35.498894 | 2 |
ATCAACG | 13850 | 0.0 | 32.212486 | 3 |
TCAACGC | 13895 | 0.0 | 32.106224 | 4 |
GTACCTG | 3675 | 0.0 | 31.726955 | 1 |
TATCAAC | 14250 | 0.0 | 31.54064 | 2 |
CAACGCA | 14570 | 0.0 | 30.61788 | 5 |
AACGCAG | 15190 | 0.0 | 29.612614 | 6 |
ACAACGC | 705 | 0.0 | 29.34076 | 3 |
GTCTCGC | 1150 | 0.0 | 28.208845 | 1 |
TCTGTCG | 1115 | 0.0 | 26.979113 | 8 |
ACGCAGA | 16795 | 0.0 | 26.446873 | 7 |
TACAACG | 795 | 0.0 | 26.020344 | 2 |
CGCAGAG | 17025 | 0.0 | 25.730684 | 8 |
ATAACGC | 350 | 0.0 | 25.520746 | 3 |
GTGGTAT | 2905 | 0.0 | 24.599796 | 1 |
TGGTATC | 2935 | 0.0 | 24.1878 | 2 |
GTACATG | 8605 | 0.0 | 24.094713 | 1 |
GCAGAGT | 17770 | 0.0 | 23.96422 | 9 |