Basic Statistics
Measure | Value |
---|---|
Filename | DRR024882_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3205069 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10021 | 0.31266097547353894 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8505 | 0.26536090174657706 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5209 | 0.16252380213967313 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5815 | 0.0 | 54.88663 | 1 |
GTATCAA | 10665 | 0.0 | 41.47394 | 1 |
TCAACGC | 13360 | 0.0 | 32.577965 | 4 |
ATCAACG | 13355 | 0.0 | 32.554966 | 3 |
TATCAAC | 14040 | 0.0 | 31.167988 | 2 |
CAACGCA | 13980 | 0.0 | 31.16678 | 5 |
AACGCAG | 14515 | 0.0 | 30.017555 | 6 |
GTGGTAT | 2465 | 0.0 | 27.459465 | 1 |
ACGCAGA | 16295 | 0.0 | 26.506567 | 7 |
CGCAGAG | 16320 | 0.0 | 26.292757 | 8 |
TACCTGG | 2940 | 0.0 | 25.420025 | 2 |
GTACATG | 9840 | 0.0 | 25.174568 | 1 |
GTACCTG | 3175 | 0.0 | 24.279886 | 1 |
TGGTATC | 2755 | 0.0 | 24.056017 | 2 |
GCAGAGT | 17300 | 0.0 | 23.934004 | 9 |
TACATGG | 9770 | 0.0 | 23.669918 | 2 |
ACATGGG | 9980 | 0.0 | 21.946981 | 3 |
AGAGTAC | 16505 | 0.0 | 20.58772 | 10-11 |
CAGAGTA | 17190 | 0.0 | 20.464514 | 10-11 |
GTACACG | 415 | 0.0 | 20.387825 | 1 |