Basic Statistics
Measure | Value |
---|---|
Filename | DRR024864_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3210232 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12688 | 0.3952362321477077 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10824 | 0.33717189287254007 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7171 | 0.22337949406771848 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6800 | 0.0 | 55.12842 | 1 |
GTATCAA | 12205 | 0.0 | 40.002373 | 1 |
TACCTGG | 3080 | 0.0 | 37.85802 | 2 |
GTACCTG | 3725 | 0.0 | 32.577637 | 1 |
ACAACGC | 670 | 0.0 | 30.8765 | 3 |
ATCAACG | 15615 | 0.0 | 30.802347 | 3 |
TCAACGC | 15785 | 0.0 | 30.4616 | 4 |
TATCAAC | 16055 | 0.0 | 30.192932 | 2 |
ACCTGGG | 3830 | 0.0 | 29.707544 | 3 |
CAACGCA | 16460 | 0.0 | 29.383747 | 5 |
AACGCAG | 17215 | 0.0 | 28.147913 | 6 |
GTGGTAT | 2825 | 0.0 | 27.638584 | 1 |
GTACATG | 12905 | 0.0 | 25.294588 | 1 |
TGGTATC | 3040 | 0.0 | 25.20989 | 2 |
TATAACG | 360 | 0.0 | 24.814644 | 2 |
ACGCAGA | 19765 | 0.0 | 24.301233 | 7 |
TACATGG | 12830 | 0.0 | 24.296505 | 2 |
CGCAGAG | 20075 | 0.0 | 23.854996 | 8 |
TACAACG | 825 | 0.0 | 23.366133 | 2 |
ACATGGG | 12970 | 0.0 | 22.946365 | 3 |