Basic Statistics
Measure | Value |
---|---|
Filename | DRR024861_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2792889 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9277 | 0.33216500906409097 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7717 | 0.27630886870190685 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5602 | 0.20058083224933032 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5850 | 0.0 | 54.342545 | 1 |
GTATCAA | 11375 | 0.0 | 41.797367 | 1 |
TACCTGG | 2825 | 0.0 | 39.610153 | 2 |
TATAACG | 330 | 0.0 | 38.467846 | 2 |
GTACCTG | 3270 | 0.0 | 35.090637 | 1 |
ACAACGC | 635 | 0.0 | 32.577606 | 3 |
ATCAACG | 14770 | 0.0 | 32.11818 | 3 |
TCAACGC | 14990 | 0.0 | 31.605246 | 4 |
TATCAAC | 15230 | 0.0 | 31.148653 | 2 |
CAACGCA | 15575 | 0.0 | 30.599205 | 5 |
AACGCAG | 16400 | 0.0 | 29.030216 | 6 |
ACCTGGG | 3650 | 0.0 | 28.982101 | 3 |
GTACCGG | 300 | 0.0 | 28.216324 | 1 |
TGGTATC | 2560 | 0.0 | 28.099556 | 2 |
GTGGTAT | 2690 | 0.0 | 27.621925 | 1 |
GTACACG | 265 | 0.0 | 26.619173 | 1 |
ATAACGC | 495 | 0.0 | 26.594574 | 3 |
TACAACG | 825 | 0.0 | 26.215122 | 2 |
TAACGCA | 470 | 0.0 | 26.000143 | 4 |
ACGCAGA | 18350 | 0.0 | 25.63608 | 7 |