Basic Statistics
Measure | Value |
---|---|
Filename | DRR024860_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4005227 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7976 | 0.19913977410019457 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6663 | 0.16635761219027037 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6050 | 0.0 | 52.683174 | 1 |
GTATCAA | 10825 | 0.0 | 40.388027 | 1 |
ATCAACG | 13145 | 0.0 | 32.540497 | 3 |
TCAACGC | 13295 | 0.0 | 32.208313 | 4 |
TATCAAC | 14080 | 0.0 | 30.715363 | 2 |
CAACGCA | 13965 | 0.0 | 30.629011 | 5 |
AACGCAG | 14535 | 0.0 | 29.523045 | 6 |
ACGCAGA | 16485 | 0.0 | 25.631306 | 7 |
CGCAGAG | 16510 | 0.0 | 25.563387 | 8 |
GTACATG | 11235 | 0.0 | 25.27327 | 1 |
TACATGG | 11190 | 0.0 | 23.566944 | 2 |
GCAGAGT | 17690 | 0.0 | 23.379972 | 9 |
GTACGAC | 285 | 3.6379788E-12 | 23.09014 | 3 |
GTGGTAT | 3035 | 0.0 | 22.924541 | 1 |
ACATGGG | 11275 | 0.0 | 22.720783 | 3 |
TGGTATC | 3075 | 0.0 | 21.860567 | 2 |
AGAGTAC | 16400 | 0.0 | 20.089231 | 10-11 |
CAGAGTA | 17450 | 0.0 | 19.890432 | 10-11 |
GAGTACT | 11690 | 0.0 | 19.619549 | 12-13 |
CATGGGG | 7210 | 0.0 | 18.710464 | 4 |