Basic Statistics
Measure | Value |
---|---|
Filename | DRR024852_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3194318 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22757 | 0.7124212429695478 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19006 | 0.5949939861967406 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13421 | 0.4201522828973196 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5502 | 0.17224333957984148 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 5445 | 0.17045892112181693 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4908 | 0.15364782091200688 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3685 | 0.1153610880319367 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3484 | 0.10906866504837652 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATAACG | 385 | 0.0 | 50.076115 | 2 |
GGTATCA | 12135 | 0.0 | 47.804516 | 1 |
TACCTGG | 3375 | 0.0 | 43.74852 | 2 |
GTATCAA | 20850 | 0.0 | 38.315746 | 1 |
TACAACG | 745 | 0.0 | 36.608273 | 2 |
TAACGCA | 570 | 0.0 | 35.45993 | 4 |
ACAACGC | 870 | 0.0 | 35.1308 | 3 |
ACCTGGG | 4070 | 0.0 | 35.00597 | 3 |
GTACCTG | 4760 | 0.0 | 31.925756 | 1 |
ATAACGC | 685 | 0.0 | 30.889854 | 3 |
ATCAACG | 26765 | 0.0 | 29.637514 | 3 |
TCAACGC | 26930 | 0.0 | 29.410868 | 4 |
TATCAAC | 27480 | 0.0 | 29.021286 | 2 |
CAACGCA | 27940 | 0.0 | 28.465462 | 5 |
AACGCAG | 28935 | 0.0 | 27.64603 | 6 |
GTATAAC | 925 | 0.0 | 27.46614 | 1 |
GTACAAC | 1155 | 0.0 | 26.884848 | 1 |
GTACATG | 19710 | 0.0 | 26.615454 | 1 |
TACATGG | 19520 | 0.0 | 25.968475 | 2 |
ACATGGG | 20025 | 0.0 | 24.397028 | 3 |