Basic Statistics
Measure | Value |
---|---|
Filename | DRR024847_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4041062 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8103 | 0.2005165968747819 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7090 | 0.17544892901915388 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4130 | 0.10220085710142533 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9505 | 0.0 | 33.630867 | 1 |
GTATCAA | 15185 | 0.0 | 32.288715 | 1 |
ATCAACG | 17075 | 0.0 | 28.217436 | 3 |
TCAACGC | 17255 | 0.0 | 27.977219 | 4 |
CAACGCA | 17800 | 0.0 | 27.120611 | 5 |
TATCAAC | 17865 | 0.0 | 27.049587 | 2 |
AACGCAG | 18450 | 0.0 | 26.162874 | 6 |
ACGCAGA | 20170 | 0.0 | 23.745117 | 7 |
CGCAGAG | 20070 | 0.0 | 23.72233 | 8 |
GTACATG | 9285 | 0.0 | 22.985569 | 1 |
GAGTACT | 12945 | 0.0 | 21.565699 | 12-13 |
TACATGG | 9380 | 0.0 | 21.399103 | 2 |
GCAGAGT | 21615 | 0.0 | 21.309149 | 9 |
AGAGTAC | 16765 | 0.0 | 21.025824 | 10-11 |
ACATGGG | 9640 | 0.0 | 20.089752 | 3 |
TCTGTCG | 1155 | 0.0 | 19.939276 | 8 |
CTGTCGC | 1315 | 0.0 | 19.300266 | 9 |
AGTACTT | 13940 | 0.0 | 19.16668 | 12-13 |
TATAACG | 420 | 0.0 | 19.026993 | 2 |
GTCTCGC | 1180 | 0.0 | 18.723934 | 1 |