Basic Statistics
Measure | Value |
---|---|
Filename | DRR024844_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3413303 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10463 | 0.30653592722357204 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8942 | 0.2619749843480054 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5285 | 0.15483536035330003 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6920 | 0.0 | 52.376408 | 1 |
GTATCAA | 12585 | 0.0 | 40.379402 | 1 |
ATCAACG | 15565 | 0.0 | 32.58481 | 3 |
TCAACGC | 15805 | 0.0 | 32.090004 | 4 |
TATCAAC | 16120 | 0.0 | 31.4347 | 2 |
CAACGCA | 16465 | 0.0 | 30.917873 | 5 |
AACGCAG | 17070 | 0.0 | 29.902489 | 6 |
ACAACGC | 660 | 0.0 | 27.775604 | 3 |
TATAACG | 305 | 0.0 | 27.741392 | 2 |
GTGGTAT | 3285 | 0.0 | 26.760464 | 1 |
ACGCAGA | 19135 | 0.0 | 26.233355 | 7 |
CGCAGAG | 19130 | 0.0 | 25.969948 | 8 |
TGGTATC | 3270 | 0.0 | 25.15625 | 2 |
GTACATG | 10500 | 0.0 | 23.863014 | 1 |
GCAGAGT | 20360 | 0.0 | 23.68505 | 9 |
TACATGG | 10520 | 0.0 | 22.564787 | 2 |
ACATGGG | 10470 | 0.0 | 21.729092 | 3 |
GTACCGG | 350 | 0.0 | 21.490147 | 1 |
GAGTACT | 14215 | 0.0 | 20.978151 | 12-13 |
AGAGTAC | 18700 | 0.0 | 20.723053 | 10-11 |