Basic Statistics
Measure | Value |
---|---|
Filename | DRR024843_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7319774 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14118 | 0.19287480733694784 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10851 | 0.1482422817972249 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 11490 | 0.0 | 52.49462 | 1 |
GTATCAA | 21865 | 0.0 | 43.36752 | 1 |
ATCAACG | 28325 | 0.0 | 33.173534 | 3 |
TCAACGC | 28550 | 0.0 | 32.928333 | 4 |
TATCAAC | 30295 | 0.0 | 31.126234 | 2 |
CAACGCA | 31640 | 0.0 | 29.683002 | 5 |
AACGCAG | 32650 | 0.0 | 28.820007 | 6 |
ACGCAGA | 35065 | 0.0 | 26.539497 | 7 |
GTACATG | 34860 | 0.0 | 25.515375 | 1 |
CGCAGAG | 36405 | 0.0 | 25.445915 | 8 |
TACATGG | 33860 | 0.0 | 25.211315 | 2 |
GTGGTAT | 4855 | 0.0 | 24.885828 | 1 |
GCAGAGT | 38010 | 0.0 | 23.790287 | 9 |
ACATGGG | 36070 | 0.0 | 22.922846 | 3 |
TGGTATC | 5485 | 0.0 | 20.911243 | 2 |
CATGGGG | 23330 | 0.0 | 20.631514 | 4 |
AGAGTAC | 36555 | 0.0 | 20.037912 | 10-11 |
CAGAGTA | 37900 | 0.0 | 19.2586 | 10-11 |
GTACTTT | 19225 | 0.0 | 18.945671 | 14-15 |
AGTACTT | 19730 | 0.0 | 18.531702 | 12-13 |