Basic Statistics
Measure | Value |
---|---|
Filename | DRR024842_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12583320 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 51687 | 0.41075805113435887 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 39820 | 0.31645066643779224 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 25509 | 0.2027207446047625 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 22795 | 0.0 | 60.108707 | 1 |
GTATCAA | 45530 | 0.0 | 44.27831 | 1 |
ATCAACG | 56480 | 0.0 | 35.294247 | 3 |
TCAACGC | 56855 | 0.0 | 34.97549 | 4 |
CAACGCA | 58890 | 0.0 | 33.84669 | 5 |
TATCAAC | 59165 | 0.0 | 33.83557 | 2 |
AACGCAG | 61735 | 0.0 | 32.324577 | 6 |
ACAACGC | 2155 | 0.0 | 29.01597 | 3 |
ACGCAGA | 69100 | 0.0 | 28.666605 | 7 |
CGCAGAG | 68870 | 0.0 | 28.632572 | 8 |
GCAGAGT | 74860 | 0.0 | 25.85812 | 9 |
GTACATG | 39830 | 0.0 | 25.614492 | 1 |
TACATGG | 39395 | 0.0 | 24.82304 | 2 |
ACATGGG | 39610 | 0.0 | 23.82184 | 3 |
GTGGTAT | 8765 | 0.0 | 23.773237 | 1 |
TACAACG | 2660 | 0.0 | 22.446821 | 2 |
TGGTATC | 8955 | 0.0 | 22.1029 | 2 |
AGAGTAC | 71720 | 0.0 | 21.70554 | 10-11 |
CAGAGTA | 74885 | 0.0 | 21.340418 | 10-11 |
GAGTACT | 55190 | 0.0 | 21.292244 | 12-13 |