Basic Statistics
Measure | Value |
---|---|
Filename | DRR024838_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7652738 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16028 | 0.20944137902016244 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11983 | 0.15658447995998295 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 12175 | 0.0 | 55.906456 | 1 |
GTATCAA | 24000 | 0.0 | 43.942707 | 1 |
ATCAACG | 29455 | 0.0 | 35.307278 | 3 |
TCAACGC | 29975 | 0.0 | 34.6364 | 4 |
CAACGCA | 31475 | 0.0 | 33.015602 | 5 |
TATCAAC | 32050 | 0.0 | 32.551228 | 2 |
AACGCAG | 33220 | 0.0 | 31.295282 | 6 |
ACGCAGA | 37920 | 0.0 | 27.117323 | 7 |
CGCAGAG | 37845 | 0.0 | 26.922346 | 8 |
GTACATG | 33535 | 0.0 | 25.024126 | 1 |
TACATGG | 33125 | 0.0 | 24.454992 | 2 |
GCAGAGT | 41850 | 0.0 | 23.672129 | 9 |
ACATGGG | 34525 | 0.0 | 22.564564 | 3 |
GTGGTAT | 5430 | 0.0 | 21.570587 | 1 |
GAGTACT | 21655 | 0.0 | 19.62965 | 12-13 |
TGGTATC | 5540 | 0.0 | 19.603802 | 2 |
AGAGTAC | 38875 | 0.0 | 19.590286 | 10-11 |
CAGAGTA | 41035 | 0.0 | 19.469582 | 10-11 |
AGTACTT | 21760 | 0.0 | 19.135376 | 12-13 |
GTACTTT | 22005 | 0.0 | 18.836895 | 14-15 |