Basic Statistics
Measure | Value |
---|---|
Filename | DRR024836_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7956651 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19174 | 0.24098078450342988 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14638 | 0.183971874598999 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8083 | 0.10158796709821757 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 12275 | 0.0 | 47.454903 | 1 |
GTATCAA | 22550 | 0.0 | 41.051636 | 1 |
ATCAACG | 26435 | 0.0 | 34.445065 | 3 |
TCAACGC | 26505 | 0.0 | 34.352367 | 4 |
CAACGCA | 27845 | 0.0 | 32.801323 | 5 |
TATCAAC | 28360 | 0.0 | 32.12542 | 2 |
AACGCAG | 28760 | 0.0 | 31.967617 | 6 |
ACGCAGA | 32095 | 0.0 | 28.338305 | 7 |
CGCAGAG | 32375 | 0.0 | 27.845005 | 8 |
GTACATG | 20060 | 0.0 | 25.171242 | 1 |
GCAGAGT | 35750 | 0.0 | 24.769276 | 9 |
TACATGG | 20060 | 0.0 | 23.200935 | 2 |
ACATGGG | 20585 | 0.0 | 21.74016 | 3 |
AGAGTAC | 31870 | 0.0 | 21.030323 | 10-11 |
ACAACGC | 1725 | 0.0 | 20.983519 | 3 |
GAGTACT | 23840 | 0.0 | 20.75885 | 12-13 |
CAGAGTA | 35125 | 0.0 | 20.14526 | 10-11 |
GTACCGG | 710 | 0.0 | 19.865257 | 1 |
TACCTGG | 6000 | 0.0 | 19.35294 | 2 |
AGTACTT | 25395 | 0.0 | 18.664177 | 12-13 |