FastQCFastQC Report
Thu 2 Jun 2016
DRR024833_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameDRR024833_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10160806
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT319520.3144632423845116No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT248020.2440948090141668No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT154600.1521532839028715No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA158750.055.468931
GTATCAA316350.044.1022721
ATCAACG383200.036.036233
TCAACGC384200.035.854364
CAACGCA397600.034.6814465
TATCAAC402350.034.4846732
AACGCAG413450.033.408746
ACGCAGA467900.029.2079667
CGCAGAG472300.028.7961338
GCAGAGT521150.025.709179
GTACATG294050.025.3391281
TACATGG291700.024.3228072
GTGGTAT66800.022.9561371
ACATGGG301600.022.7137643
AGAGTAC482800.021.27341310-11
GAGTACT357900.021.12092412-13
CAGAGTA511700.020.74695810-11
AGTACTT372100.019.5192412-13
CATGGGG188650.019.5069084
GTACTTT389900.019.30913714-15