Basic Statistics
Measure | Value |
---|---|
Filename | DRR024833_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10160806 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31952 | 0.3144632423845116 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 24802 | 0.2440948090141668 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15460 | 0.1521532839028715 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 15875 | 0.0 | 55.46893 | 1 |
GTATCAA | 31635 | 0.0 | 44.102272 | 1 |
ATCAACG | 38320 | 0.0 | 36.03623 | 3 |
TCAACGC | 38420 | 0.0 | 35.85436 | 4 |
CAACGCA | 39760 | 0.0 | 34.681446 | 5 |
TATCAAC | 40235 | 0.0 | 34.484673 | 2 |
AACGCAG | 41345 | 0.0 | 33.40874 | 6 |
ACGCAGA | 46790 | 0.0 | 29.207966 | 7 |
CGCAGAG | 47230 | 0.0 | 28.796133 | 8 |
GCAGAGT | 52115 | 0.0 | 25.70917 | 9 |
GTACATG | 29405 | 0.0 | 25.339128 | 1 |
TACATGG | 29170 | 0.0 | 24.322807 | 2 |
GTGGTAT | 6680 | 0.0 | 22.956137 | 1 |
ACATGGG | 30160 | 0.0 | 22.713764 | 3 |
AGAGTAC | 48280 | 0.0 | 21.273413 | 10-11 |
GAGTACT | 35790 | 0.0 | 21.120924 | 12-13 |
CAGAGTA | 51170 | 0.0 | 20.746958 | 10-11 |
AGTACTT | 37210 | 0.0 | 19.51924 | 12-13 |
CATGGGG | 18865 | 0.0 | 19.506908 | 4 |
GTACTTT | 38990 | 0.0 | 19.309137 | 14-15 |