Basic Statistics
Measure | Value |
---|---|
Filename | DRR024809_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10540927 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 60624 | 0.5751296826170981 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 47880 | 0.45422949992918077 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32889 | 0.312012406498973 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 12479 | 0.11838617229774952 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11748 | 0.11145129835355087 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10656 | 0.10109167817972746 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10547 | 0.10005761352867731 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 22245 | 0.0 | 62.544655 | 1 |
GTATCAA | 44535 | 0.0 | 45.80987 | 1 |
ATCAACG | 58030 | 0.0 | 34.831547 | 3 |
TCAACGC | 58395 | 0.0 | 34.583923 | 4 |
TATCAAC | 60105 | 0.0 | 33.69948 | 2 |
CAACGCA | 60455 | 0.0 | 33.44405 | 5 |
AACGCAG | 62955 | 0.0 | 32.10803 | 6 |
GTACATG | 47225 | 0.0 | 29.67044 | 1 |
TACATGG | 46030 | 0.0 | 29.087433 | 2 |
ACGCAGA | 70625 | 0.0 | 28.360588 | 7 |
CGCAGAG | 70935 | 0.0 | 27.98251 | 8 |
ACATGGG | 47305 | 0.0 | 27.100523 | 3 |
ACAACGC | 2185 | 0.0 | 26.904037 | 3 |
TATAACG | 1025 | 0.0 | 26.611113 | 2 |
GTGGTAT | 7440 | 0.0 | 26.11851 | 1 |
GCAGAGT | 75960 | 0.0 | 25.654797 | 9 |
TACCTGG | 8690 | 0.0 | 25.651777 | 2 |
TGGTATC | 7800 | 0.0 | 24.056765 | 2 |
CATGGGG | 23480 | 0.0 | 23.570301 | 4 |
CATGGGA | 20315 | 0.0 | 22.543892 | 4 |