Basic Statistics
Measure | Value |
---|---|
Filename | DRR028453_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1424736 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1840 | 0.0 | 72.85648 | 1 |
GTATCAA | 3605 | 0.0 | 54.874638 | 1 |
TCAACGC | 3595 | 0.0 | 54.173447 | 4 |
ATCAACG | 3615 | 0.0 | 53.873734 | 3 |
CAACGCA | 3720 | 0.0 | 52.353104 | 5 |
AACGCAG | 3980 | 0.0 | 49.11496 | 6 |
CGCAGAG | 4335 | 0.0 | 43.75677 | 8 |
ACGCAGA | 4395 | 0.0 | 43.6536 | 7 |
TATCAAC | 4520 | 0.0 | 43.24724 | 2 |
GCAGAGT | 5070 | 0.0 | 34.128956 | 9 |
GTACATG | 3285 | 0.0 | 32.867386 | 1 |
TACATGG | 3320 | 0.0 | 29.657455 | 2 |
ACATGGG | 3490 | 0.0 | 26.3458 | 3 |
CCGTATA | 180 | 1.5351654E-4 | 24.133026 | 9 |
CAGAGTA | 4955 | 0.0 | 21.624752 | 9 |
GAGTACA | 2485 | 0.0 | 21.286818 | 1 |
CATGGGA | 1775 | 0.0 | 20.80199 | 4 |
TAGATCG | 175 | 0.0036891357 | 20.685453 | 5 |
TCTATAC | 1170 | 0.0 | 20.420256 | 3 |
GTGGTAT | 1000 | 0.0 | 20.289545 | 1 |