DRR028438_2.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	DRR028438_2.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13226
Sequences flagged as poor quality	0
Sequence length	151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	82	0.6199909269620445	No Hit
GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA	52	0.39316497807349154	No Hit
TAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCATCGCA	43	0.32511719340692574	No Hit
CCGGTAAATGCGGGAGCTCCGCGCGCAGTTGCGGCATCGCATTGCCCATA	34	0.2570694087403599	No Hit
ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA	25	0.18902162407379403	No Hit
GGTAAATGCGGGAGCTCCGCGCGCAGTTGCGGCATCGCATTGCCCATAAT	21	0.15877816422198698	No Hit
GACTAACATTTCGCGATCGTTCATCGCATCACCAAAGGCCGTGCAATCGC	17	0.12853470437017994	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	17	0.12853470437017994	No Hit
CCTTTATTGCAGCCCACCGGCAGCACTTCGAGGCAATCCGTGGCGGAAAA	15	0.11341297444427642	No Hit
CAGTTGCGGCATCGCATTGCCCATAATAAATCCGCTACCGACGCTGACTA	15	0.11341297444427642	No Hit
TGCGGGAGCTCCGCGCGCAGTTGCGGCATCGCATTGCCCATAATAAATCC	15	0.11341297444427642	No Hit
ATGCGGGAGCTCCGCGCGCAGTTGCGGCATCGCATTGCCCATAATAAATC	14	0.10585210948132466	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATTCC	10	0.006776074	146.65892	4
CAGAGAC	10	0.006776074	146.65892	3
CCTCCAT	10	0.006776074	146.65892	1
TCCATGC	10	0.006776074	146.65892	3
TACCCTC	10	0.006776074	146.65892	7
AGGTAAT	10	0.006776074	146.65892	7
TAGATTA	10	0.006776074	146.65892	6
GCAGAGT	40	6.303945E-5	72.76538	8
ACGCAGA	45	1.0869547E-4	65.18174	6
TCAACGC	45	1.0869547E-4	65.18174	3
CATGGGA	45	1.0869547E-4	65.18174	4
TCCGCGC	35	0.0034377272	62.37033	8
CGCAGAG	50	1.8305526E-4	58.66357	7
CCGCGCG	40	0.0058330027	54.574036	9
ATCAACG	55	2.9317656E-4	53.330513	2
CAGAGTA	55	3.0466207E-4	52.92028	9
GTATCAA	45	0.009012134	48.886307	1
AACGCAG	80	3.3028526E-5	45.83091	5
TATCAAC	80	3.3028526E-5	45.83091	1
GTACATG	65	6.684222E-4	45.12582	1