Basic Statistics
Measure | Value |
---|---|
Filename | DRR028410_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1929213 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3859 | 0.20002975306510998 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3063 | 0.15876940493351432 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2645 | 0.0 | 84.71544 | 1 |
GTATCAA | 5465 | 0.0 | 62.099113 | 1 |
ATCAACG | 6145 | 0.0 | 55.194363 | 3 |
TCAACGC | 6140 | 0.0 | 55.12128 | 4 |
CAACGCA | 6345 | 0.0 | 52.565357 | 5 |
AACGCAG | 6530 | 0.0 | 51.076138 | 6 |
TATCAAC | 6865 | 0.0 | 49.300022 | 2 |
ACGCAGA | 7440 | 0.0 | 44.73147 | 7 |
CGCAGAG | 7485 | 0.0 | 44.268806 | 8 |
GCAGAGT | 8920 | 0.0 | 36.090385 | 9 |
GTACATG | 4245 | 0.0 | 32.62762 | 1 |
TACATGG | 4540 | 0.0 | 29.212318 | 2 |
ACATGGG | 4775 | 0.0 | 27.622868 | 3 |
GAGTACA | 3125 | 0.0 | 23.204899 | 1 |
CATGGGG | 4135 | 0.0 | 23.134983 | 4 |
CAGAGTA | 8735 | 0.0 | 23.075724 | 9 |
GTATAAG | 1040 | 0.0 | 23.009668 | 1 |
AACGCCG | 210 | 4.3137604E-4 | 20.715973 | 6 |
GTGGTAT | 1260 | 0.0 | 19.567623 | 1 |
AGAGTAC | 7895 | 0.0 | 19.092648 | 10-14 |