Basic Statistics
Measure | Value |
---|---|
Filename | DRR028399_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1775431 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4069 | 0.22918378692272467 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3454 | 0.1945443106490762 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1924 | 0.10836805260243851 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2665 | 0.0 | 83.00557 | 1 |
GTATCAA | 5045 | 0.0 | 60.092422 | 1 |
TCAACGC | 5850 | 0.0 | 51.41658 | 4 |
ATCAACG | 5940 | 0.0 | 50.393505 | 3 |
CAACGCA | 6050 | 0.0 | 49.25569 | 5 |
AACGCAG | 6300 | 0.0 | 47.301105 | 6 |
TATCAAC | 6650 | 0.0 | 44.795166 | 2 |
GTACATG | 4355 | 0.0 | 41.967873 | 1 |
ACGCAGA | 7120 | 0.0 | 41.548 | 7 |
CGCAGAG | 7370 | 0.0 | 40.433777 | 8 |
TACATGG | 4695 | 0.0 | 35.660492 | 2 |
ACATGGG | 4885 | 0.0 | 34.718605 | 3 |
GCAGAGT | 8485 | 0.0 | 34.180477 | 9 |
CATGGGG | 4145 | 0.0 | 28.85163 | 4 |
GTACGAC | 210 | 1.55948E-5 | 24.159597 | 3 |
CAGAGTA | 8185 | 0.0 | 23.828878 | 9 |
GTGGTAT | 1540 | 0.0 | 23.54799 | 1 |
ACCGCGT | 160 | 0.0021748787 | 22.657917 | 8 |
TGGTATC | 1480 | 0.0 | 22.037472 | 2 |
GAGTACA | 3315 | 0.0 | 21.00353 | 1 |