Basic Statistics
Measure | Value |
---|---|
Filename | DRR028333_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1391572 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 4174 | 0.29994854739819427 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCAACGC | 1715 | 0.0 | 52.39121 | 4 |
GGTATCA | 1230 | 0.0 | 50.681667 | 1 |
ATCAACG | 1800 | 0.0 | 49.91718 | 3 |
AACGCAG | 1845 | 0.0 | 47.519753 | 6 |
CAACGCA | 1985 | 0.0 | 45.631634 | 5 |
GTATCAA | 2105 | 0.0 | 45.454765 | 1 |
TACATGG | 3545 | 0.0 | 42.318798 | 2 |
GTACATG | 3735 | 0.0 | 41.5318 | 1 |
ACGCAGA | 2205 | 0.0 | 38.12252 | 7 |
TATCAAC | 2365 | 0.0 | 37.99879 | 2 |
CGCAGAG | 2160 | 0.0 | 36.568314 | 8 |
ACATGGG | 4015 | 0.0 | 35.733906 | 3 |
CATGGGG | 3650 | 0.0 | 31.366428 | 4 |
ATGGGGG | 2950 | 0.0 | 25.055016 | 5 |
GCAGAGT | 2890 | 0.0 | 23.826048 | 9 |
GTATTAG | 845 | 0.0 | 20.5879 | 1 |
CTATACT | 1060 | 0.0 | 20.507668 | 4 |
ATTGCGT | 290 | 8.271636E-6 | 19.994852 | 9 |
GAGTACA | 2225 | 0.0 | 19.872725 | 1 |
CCTATAC | 575 | 9.094947E-12 | 18.902718 | 3 |