Basic Statistics
Measure | Value |
---|---|
Filename | DRR028318_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1298540 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1407 | 0.10835245737520599 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1306 | 0.10057449135182589 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2145 | 0.0 | 65.71484 | 1 |
GTATCAA | 3610 | 0.0 | 60.18012 | 1 |
ATCAACG | 4005 | 0.0 | 53.58056 | 3 |
TCAACGC | 4015 | 0.0 | 53.266544 | 4 |
CAACGCA | 4270 | 0.0 | 50.08552 | 5 |
TATCAAC | 4515 | 0.0 | 47.68884 | 2 |
AACGCAG | 4520 | 0.0 | 47.475693 | 6 |
ACGCAGA | 5115 | 0.0 | 41.102707 | 7 |
CGCAGAG | 5275 | 0.0 | 39.718555 | 8 |
GTACATG | 5075 | 0.0 | 35.50624 | 1 |
GCAGAGT | 6115 | 0.0 | 33.78831 | 9 |
TACATGG | 5285 | 0.0 | 32.921852 | 2 |
ACATGGG | 5430 | 0.0 | 30.707613 | 3 |
GTGGTAT | 1200 | 0.0 | 30.274559 | 1 |
GAGTACA | 3810 | 0.0 | 27.080236 | 1 |
TGGTATC | 1350 | 0.0 | 25.776594 | 2 |
CATGGGG | 4160 | 0.0 | 24.74646 | 4 |
CCCTATA | 505 | 0.0 | 24.404821 | 2 |
AGTACAT | 4055 | 0.0 | 24.13576 | 2 |
ACCGCGT | 185 | 1.8316468E-4 | 23.512432 | 8 |