Basic Statistics
Measure | Value |
---|---|
Filename | DRR028312_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 978927 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1322 | 0.13504582057701953 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1319 | 0.134739362587813 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1700 | 0.0 | 71.77569 | 1 |
GTATCAA | 2895 | 0.0 | 61.716816 | 1 |
TCAACGC | 3215 | 0.0 | 54.56976 | 4 |
ATCAACG | 3275 | 0.0 | 53.570007 | 3 |
CAACGCA | 3345 | 0.0 | 52.448963 | 5 |
AACGCAG | 3510 | 0.0 | 50.189957 | 6 |
TATCAAC | 3720 | 0.0 | 47.161766 | 2 |
ACGCAGA | 3920 | 0.0 | 44.015797 | 7 |
CGCAGAG | 4120 | 0.0 | 41.879105 | 8 |
GTACATG | 3775 | 0.0 | 39.056747 | 1 |
GCAGAGT | 4865 | 0.0 | 35.465965 | 9 |
TACATGG | 4055 | 0.0 | 35.2203 | 2 |
ACATGGG | 4005 | 0.0 | 34.392895 | 3 |
GTGGTAT | 980 | 0.0 | 31.127209 | 1 |
TGGTATC | 1020 | 0.0 | 27.719288 | 2 |
GAGTACA | 2685 | 0.0 | 27.050339 | 1 |
GTATACG | 135 | 7.99834E-4 | 26.900059 | 1 |
CTCGTAC | 110 | 0.0095872935 | 26.410965 | 1 |
CATGGGA | 1465 | 0.0 | 26.22744 | 4 |
CATGGGG | 3005 | 0.0 | 25.814098 | 4 |