Basic Statistics
Measure | Value |
---|---|
Filename | DRR028309_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1448945 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1830 | 0.0 | 67.85779 | 1 |
GTATCAA | 3305 | 0.0 | 55.15145 | 1 |
TCAACGC | 3535 | 0.0 | 50.04032 | 4 |
ATCAACG | 3580 | 0.0 | 49.613834 | 3 |
CAACGCA | 3815 | 0.0 | 46.36764 | 5 |
AACGCAG | 4075 | 0.0 | 43.409214 | 6 |
TATCAAC | 4425 | 0.0 | 40.631058 | 2 |
ACGCAGA | 4560 | 0.0 | 37.838318 | 7 |
CGCAGAG | 4685 | 0.0 | 36.82876 | 8 |
GTACATG | 5375 | 0.0 | 36.073433 | 1 |
TACATGG | 5425 | 0.0 | 33.007828 | 2 |
ACATGGG | 5585 | 0.0 | 30.63434 | 3 |
GCAGAGT | 5770 | 0.0 | 29.526485 | 9 |
GTGGTAT | 1080 | 0.0 | 28.24101 | 1 |
GTATACG | 210 | 4.9176015E-7 | 27.664663 | 1 |
GTCTACG | 370 | 0.0 | 27.477741 | 1 |
GAGTACA | 4010 | 0.0 | 25.534622 | 1 |
TATAACG | 145 | 0.0012270106 | 24.998947 | 2 |
CATGGGG | 4305 | 0.0 | 24.755054 | 4 |
AGTACAT | 4270 | 0.0 | 22.581015 | 2 |