Basic Statistics
Measure | Value |
---|---|
Filename | DRR028266_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1154497 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1660 | 0.0 | 66.50089 | 1 |
GTATCAA | 2770 | 0.0 | 60.30316 | 1 |
TCAACGC | 3080 | 0.0 | 53.666615 | 4 |
ATCAACG | 3125 | 0.0 | 52.661827 | 3 |
CAACGCA | 3250 | 0.0 | 50.85944 | 5 |
AACGCAG | 3560 | 0.0 | 46.43067 | 6 |
TATCAAC | 3690 | 0.0 | 44.991367 | 2 |
ACGCAGA | 4000 | 0.0 | 40.0546 | 7 |
CGCAGAG | 4160 | 0.0 | 38.68831 | 8 |
GTACATG | 4065 | 0.0 | 38.2336 | 1 |
TACATGG | 4255 | 0.0 | 34.757675 | 2 |
GTGGTAT | 1040 | 0.0 | 33.51968 | 1 |
GCAGAGT | 4750 | 0.0 | 33.42494 | 9 |
ACATGGG | 4500 | 0.0 | 31.576473 | 3 |
TAGATCG | 125 | 5.15557E-4 | 28.998806 | 5 |
TGGTATC | 1190 | 0.0 | 25.58718 | 2 |
GTATACG | 205 | 1.2732402E-5 | 24.799114 | 1 |
GAGTACA | 3220 | 0.0 | 24.58457 | 1 |
CATGGGG | 3480 | 0.0 | 24.58232 | 4 |
TATACGG | 210 | 1.5558358E-5 | 24.165668 | 2 |