Basic Statistics
Measure | Value |
---|---|
Filename | DRR028208_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2370597 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2544 | 0.10731473970480854 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2388 | 0.10073411887385329 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3435 | 0.0 | 66.78998 | 1 |
GTATCAA | 5890 | 0.0 | 58.05726 | 1 |
TCAACGC | 6570 | 0.0 | 50.97944 | 4 |
ATCAACG | 6645 | 0.0 | 50.513145 | 3 |
CAACGCA | 6995 | 0.0 | 47.985683 | 5 |
AACGCAG | 7290 | 0.0 | 46.043877 | 6 |
TATCAAC | 7850 | 0.0 | 43.22098 | 2 |
ACGCAGA | 8470 | 0.0 | 39.115707 | 7 |
CGCAGAG | 8730 | 0.0 | 37.701622 | 8 |
GTACATG | 8190 | 0.0 | 34.749863 | 1 |
GCAGAGT | 10010 | 0.0 | 32.44609 | 9 |
TACATGG | 8270 | 0.0 | 32.25973 | 2 |
ACATGGG | 8425 | 0.0 | 30.375486 | 3 |
GTGGTAT | 1915 | 0.0 | 26.159609 | 1 |
CATGGGG | 6900 | 0.0 | 26.056795 | 4 |
GAGTACA | 6075 | 0.0 | 24.380064 | 1 |
CTCCGAC | 1000 | 0.0 | 23.205807 | 145 |
AGTACAT | 6220 | 0.0 | 22.611523 | 2 |
TACGGGT | 335 | 5.509537E-8 | 21.640816 | 4 |
TGGTATC | 2185 | 0.0 | 21.566534 | 2 |