Basic Statistics
Measure | Value |
---|---|
Filename | DRR028161_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1216124 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1868 | 0.15360275761353284 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1867 | 0.15352052915656628 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1980 | 0.0 | 66.3764 | 1 |
GTATCAA | 3250 | 0.0 | 55.407505 | 1 |
TCAACGC | 3790 | 0.0 | 47.247517 | 4 |
ATCAACG | 3860 | 0.0 | 46.390697 | 3 |
CTCCGAC | 485 | 0.0 | 46.34795 | 145 |
CAACGCA | 3990 | 0.0 | 45.060917 | 5 |
AACGCAG | 4195 | 0.0 | 42.858894 | 6 |
TATCAAC | 4300 | 0.0 | 40.971035 | 2 |
ACGCAGA | 4800 | 0.0 | 36.852745 | 7 |
CGCAGAG | 4915 | 0.0 | 35.84297 | 8 |
GTGGTAT | 1095 | 0.0 | 32.492435 | 1 |
CCGTTCG | 90 | 0.003629223 | 32.220978 | 9 |
GCAGAGT | 5675 | 0.0 | 30.65961 | 9 |
GTACATG | 3100 | 0.0 | 30.449627 | 1 |
TGGTATC | 1145 | 0.0 | 29.759901 | 2 |
TACATGG | 3215 | 0.0 | 27.73724 | 2 |
ACATGGG | 3380 | 0.0 | 26.167631 | 3 |
CAGAGTA | 5460 | 0.0 | 24.962408 | 9 |
GAGTACA | 2415 | 0.0 | 24.353884 | 1 |
TCGTATC | 195 | 2.6122402E-4 | 22.311419 | 145 |