Basic Statistics
Measure | Value |
---|---|
Filename | DRR028147_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2349165 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3485 | 0.0 | 71.25532 | 1 |
GTATCAA | 5725 | 0.0 | 54.282806 | 1 |
ATCAACG | 6505 | 0.0 | 46.47471 | 3 |
TCAACGC | 6545 | 0.0 | 46.412216 | 4 |
CAACGCA | 6875 | 0.0 | 44.078976 | 5 |
AACGCAG | 7155 | 0.0 | 42.354015 | 6 |
TATCAAC | 7575 | 0.0 | 40.292793 | 2 |
ACGCAGA | 8395 | 0.0 | 35.83895 | 7 |
CGCAGAG | 8670 | 0.0 | 34.702194 | 8 |
GTACATG | 6975 | 0.0 | 33.10373 | 1 |
GCAGAGT | 10100 | 0.0 | 29.35823 | 9 |
TACATGG | 7565 | 0.0 | 29.03766 | 2 |
ACATGGG | 7970 | 0.0 | 26.74342 | 3 |
GTGGTAT | 1960 | 0.0 | 26.302456 | 1 |
GAGTACA | 5700 | 0.0 | 24.840124 | 1 |
TATACCG | 220 | 2.2308617E-5 | 23.067646 | 5 |
TGGTATC | 2090 | 0.0 | 22.547323 | 2 |
CAGAGTA | 9555 | 0.0 | 22.231302 | 9 |
CATGGGG | 6185 | 0.0 | 21.685028 | 4 |
AGTACAT | 6110 | 0.0 | 21.239277 | 2 |