Basic Statistics
Measure | Value |
---|---|
Filename | DRR028134_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2191625 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3090 | 0.1409912735983574 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2947 | 0.1344664347230936 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3655 | 0.0 | 71.108536 | 1 |
GTATCAA | 5860 | 0.0 | 52.280643 | 1 |
TCAACGC | 6590 | 0.0 | 45.544525 | 4 |
ATCAACG | 6770 | 0.0 | 44.65485 | 3 |
CAACGCA | 7035 | 0.0 | 42.766655 | 5 |
AACGCAG | 7300 | 0.0 | 41.41279 | 6 |
TATCAAC | 7455 | 0.0 | 40.358185 | 2 |
GTACATG | 8420 | 0.0 | 39.403084 | 1 |
TACATGG | 8855 | 0.0 | 36.269897 | 2 |
ACATGGG | 8805 | 0.0 | 35.404655 | 3 |
ACGCAGA | 8605 | 0.0 | 34.879536 | 7 |
CGCAGAG | 8930 | 0.0 | 33.528942 | 8 |
CATGGGG | 6950 | 0.0 | 30.14632 | 4 |
GAGTACA | 5655 | 0.0 | 29.270378 | 1 |
GCAGAGT | 10230 | 0.0 | 28.488638 | 9 |
CAGAGTA | 9580 | 0.0 | 24.518887 | 9 |
AGTACAT | 6605 | 0.0 | 24.257757 | 2 |
ATGGGGG | 4015 | 0.0 | 23.65413 | 5 |
TATAACG | 350 | 8.749521E-8 | 20.713959 | 2 |
GTACGAC | 280 | 6.09776E-6 | 20.713488 | 3 |