FastQCFastQC Report
Thu 2 Jun 2016
DRR015133_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameDRR015133_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8872105
Sequences flagged as poor quality0
Sequence length97
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT224310.2528261331442763No Hit
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGT224010.25248799467544625No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT201610.22724032233613103No Hit
TCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTG181190.20422436389109463TruSeq Adapter, Index 11 (96% over 28bp)
ATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTT142900.1610666239860777TruSeq Adapter, Index 11 (95% over 21bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT112170.1264299734955797No Hit
ACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCT98660.11120247111593021RNA PCR Primer, Index 11 (95% over 23bp)

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA174400.054.552181
GTATCAA319450.039.7570041
GTGGTAT66650.032.9199521
TGGTATC69250.030.820212
ATCAACG415100.030.5358853
TCAACGC417350.030.3257754
TATCAAC422400.029.9720022
CAACGCA460250.027.5287595
AACGCAG479000.026.5525026
GTACATG410250.024.588581
TACATGG405750.024.3042872
ACGCAGA525950.024.1564277
CGCAGAG533400.023.8106428
CATGGGT109350.022.674254
GCAGAGT564700.022.281439
ACATGGG427750.022.155493
TCGATTA15650.019.4882471
CAGAGTA542200.019.31370210-11
GTACTTT329500.019.0008614-15
CATGGGG222850.018.7610914