Basic Statistics
Measure | Value |
---|---|
Filename | DRR015133_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8872105 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22431 | 0.2528261331442763 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGT | 22401 | 0.25248799467544625 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20161 | 0.22724032233613103 | No Hit |
TCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTG | 18119 | 0.20422436389109463 | TruSeq Adapter, Index 11 (96% over 28bp) |
ATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTT | 14290 | 0.1610666239860777 | TruSeq Adapter, Index 11 (95% over 21bp) |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11217 | 0.1264299734955797 | No Hit |
ACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCT | 9866 | 0.11120247111593021 | RNA PCR Primer, Index 11 (95% over 23bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 17440 | 0.0 | 54.55218 | 1 |
GTATCAA | 31945 | 0.0 | 39.757004 | 1 |
GTGGTAT | 6665 | 0.0 | 32.919952 | 1 |
TGGTATC | 6925 | 0.0 | 30.82021 | 2 |
ATCAACG | 41510 | 0.0 | 30.535885 | 3 |
TCAACGC | 41735 | 0.0 | 30.325775 | 4 |
TATCAAC | 42240 | 0.0 | 29.972002 | 2 |
CAACGCA | 46025 | 0.0 | 27.528759 | 5 |
AACGCAG | 47900 | 0.0 | 26.552502 | 6 |
GTACATG | 41025 | 0.0 | 24.58858 | 1 |
TACATGG | 40575 | 0.0 | 24.304287 | 2 |
ACGCAGA | 52595 | 0.0 | 24.156427 | 7 |
CGCAGAG | 53340 | 0.0 | 23.810642 | 8 |
CATGGGT | 10935 | 0.0 | 22.67425 | 4 |
GCAGAGT | 56470 | 0.0 | 22.28143 | 9 |
ACATGGG | 42775 | 0.0 | 22.15549 | 3 |
TCGATTA | 1565 | 0.0 | 19.488247 | 1 |
CAGAGTA | 54220 | 0.0 | 19.313702 | 10-11 |
GTACTTT | 32950 | 0.0 | 19.00086 | 14-15 |
CATGGGG | 22285 | 0.0 | 18.761091 | 4 |