Basic Statistics
Measure | Value |
---|---|
Filename | DRR015446_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17152203 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 26002 | 0.15159568715458885 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19646 | 0.11453922274590617 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 24110 | 0.0 | 47.969513 | 1 |
GTATCAA | 46275 | 0.0 | 43.744915 | 1 |
TCAACGC | 60590 | 0.0 | 33.031975 | 4 |
ATCAACG | 60675 | 0.0 | 32.99899 | 3 |
CAACGCA | 62945 | 0.0 | 31.728338 | 5 |
TATCAAC | 64315 | 0.0 | 31.209337 | 2 |
AACGCAG | 66460 | 0.0 | 30.152964 | 6 |
ACGCAGA | 77180 | 0.0 | 25.699675 | 7 |
CGCAGAG | 76980 | 0.0 | 25.600624 | 8 |
GTACATG | 64820 | 0.0 | 24.212185 | 1 |
TACATGG | 65710 | 0.0 | 23.095663 | 2 |
GCAGAGT | 84495 | 0.0 | 22.655703 | 9 |
ACATGGG | 68220 | 0.0 | 21.544252 | 3 |
AGAGTAC | 77140 | 0.0 | 20.41716 | 10-11 |
AGTACTT | 44075 | 0.0 | 19.134813 | 12-13 |
GAGTACT | 42295 | 0.0 | 18.804827 | 12-13 |
CAGAGTA | 81610 | 0.0 | 18.007805 | 10-11 |
CATGGGG | 42220 | 0.0 | 17.925068 | 4 |
GTGGTAT | 11725 | 0.0 | 17.665565 | 1 |
GTACTTT | 45470 | 0.0 | 17.149252 | 14-15 |