Basic Statistics
Measure | Value |
---|---|
Filename | DRR015417_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9172625 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15143 | 0.16508905575012606 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12237 | 0.13340783036480833 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14895 | 0.0 | 50.396496 | 1 |
GTATCAA | 28325 | 0.0 | 40.555374 | 1 |
TCAACGC | 32815 | 0.0 | 34.451534 | 4 |
ATCAACG | 32865 | 0.0 | 34.385277 | 3 |
CAACGCA | 34375 | 0.0 | 32.927765 | 5 |
TATCAAC | 35275 | 0.0 | 32.17793 | 2 |
AACGCAG | 35740 | 0.0 | 31.70732 | 6 |
ACGCAGA | 39610 | 0.0 | 27.93181 | 7 |
CGCAGAG | 39465 | 0.0 | 27.560314 | 8 |
GTACATG | 32385 | 0.0 | 24.457485 | 1 |
GCAGAGT | 42345 | 0.0 | 24.33201 | 9 |
TACATGG | 32020 | 0.0 | 23.315344 | 2 |
GTGGTAT | 6960 | 0.0 | 22.616417 | 1 |
ACATGGG | 33945 | 0.0 | 21.457054 | 3 |
TGGTATC | 7505 | 0.0 | 20.246517 | 2 |
GAGTACT | 20925 | 0.0 | 19.825798 | 12-13 |
CAGAGTA | 40950 | 0.0 | 19.69533 | 10-11 |
AGAGTAC | 37480 | 0.0 | 19.328062 | 10-11 |
CATGGGG | 20065 | 0.0 | 18.750849 | 4 |
GTACTTT | 21600 | 0.0 | 18.70066 | 14-15 |