Basic Statistics
Measure | Value |
---|---|
Filename | DRR015411_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9003566 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 30650 | 0.34042067331988235 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 24281 | 0.26968203487373776 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13619 | 0.15126228874203843 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 16170 | 0.0 | 57.88068 | 1 |
GTATCAA | 32430 | 0.0 | 43.5358 | 1 |
ATCAACG | 39660 | 0.0 | 35.072124 | 3 |
TCAACGC | 39735 | 0.0 | 35.02825 | 4 |
CAACGCA | 40700 | 0.0 | 34.254547 | 5 |
TATCAAC | 41960 | 0.0 | 33.33501 | 2 |
AACGCAG | 42490 | 0.0 | 32.81003 | 6 |
ACGCAGA | 48075 | 0.0 | 28.629936 | 7 |
CGCAGAG | 48000 | 0.0 | 28.330862 | 8 |
GTGGTAT | 6335 | 0.0 | 25.73761 | 1 |
GCAGAGT | 51610 | 0.0 | 25.660927 | 9 |
TGGTATC | 6605 | 0.0 | 23.637135 | 2 |
GAGTACT | 33740 | 0.0 | 21.58278 | 12-13 |
GTACATG | 26165 | 0.0 | 21.235912 | 1 |
CAGAGTA | 49985 | 0.0 | 20.996752 | 10-11 |
AGAGTAC | 47240 | 0.0 | 20.93545 | 10-11 |
GTACTTT | 35410 | 0.0 | 20.185284 | 14-15 |
TACATGG | 26505 | 0.0 | 20.092388 | 2 |
AGTACTT | 34715 | 0.0 | 19.986774 | 12-13 |
TATAACG | 845 | 0.0 | 19.391853 | 2 |