Basic Statistics
Measure | Value |
---|---|
Filename | DRR015396_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7913878 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 36288 | 0.4585362574454648 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 30541 | 0.3859169929079018 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17664 | 0.2232028343120781 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 17035 | 0.0 | 58.42362 | 1 |
GTATCAA | 31510 | 0.0 | 41.015854 | 1 |
ATCAACG | 38770 | 0.0 | 32.923225 | 3 |
TCAACGC | 38770 | 0.0 | 32.81676 | 4 |
TATCAAC | 40120 | 0.0 | 31.793913 | 2 |
CAACGCA | 40325 | 0.0 | 31.596432 | 5 |
AACGCAG | 41750 | 0.0 | 30.634398 | 6 |
GTGGTAT | 6345 | 0.0 | 27.684551 | 1 |
ACGCAGA | 46030 | 0.0 | 27.350996 | 7 |
CGCAGAG | 46270 | 0.0 | 26.912424 | 8 |
GTACATG | 26955 | 0.0 | 25.290318 | 1 |
TGGTATC | 6600 | 0.0 | 25.23591 | 2 |
GCAGAGT | 48655 | 0.0 | 24.675589 | 9 |
TACATGG | 27145 | 0.0 | 23.621256 | 2 |
GAGTACT | 31965 | 0.0 | 22.07466 | 12-13 |
CAGAGTA | 46615 | 0.0 | 21.793217 | 10-11 |
ACATGGG | 28225 | 0.0 | 21.765326 | 3 |
AGAGTAC | 44025 | 0.0 | 20.641714 | 10-11 |
GTACTTT | 34340 | 0.0 | 20.369032 | 14-15 |
AGTACTT | 33270 | 0.0 | 19.301233 | 12-13 |