Basic Statistics
Measure | Value |
---|---|
Filename | DRR015367_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9768103 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21289 | 0.21794405730570202 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16013 | 0.16393152283508886 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9846 | 0.10079746292601542 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 13770 | 0.0 | 50.870544 | 1 |
GTATCAA | 26025 | 0.0 | 43.002422 | 1 |
ATCAACG | 31690 | 0.0 | 34.888 | 3 |
TCAACGC | 31675 | 0.0 | 34.861427 | 4 |
CAACGCA | 33160 | 0.0 | 33.300236 | 5 |
TATCAAC | 34085 | 0.0 | 32.489967 | 2 |
AACGCAG | 34280 | 0.0 | 32.291878 | 6 |
ACGCAGA | 39570 | 0.0 | 27.572435 | 7 |
GTACATG | 31330 | 0.0 | 26.943571 | 1 |
CGCAGAG | 40335 | 0.0 | 26.81261 | 8 |
TACATGG | 31175 | 0.0 | 25.598537 | 2 |
GTGGTAT | 5910 | 0.0 | 24.538544 | 1 |
ACATGGG | 32045 | 0.0 | 24.136852 | 3 |
GCAGAGT | 43910 | 0.0 | 24.122274 | 9 |
TGGTATC | 6875 | 0.0 | 20.250732 | 2 |
AGAGTAC | 39905 | 0.0 | 20.067072 | 10-11 |
GAGTACT | 26825 | 0.0 | 19.81079 | 12-13 |
CAGAGTA | 41815 | 0.0 | 19.797876 | 10-11 |
CATGGGG | 20480 | 0.0 | 19.461046 | 4 |
GTACTTT | 27025 | 0.0 | 19.192778 | 14-15 |