Basic Statistics
Measure | Value |
---|---|
Filename | DRR015362_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12627256 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 37214 | 0.2947116934985716 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29159 | 0.23092111223531067 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19843 | 0.1571441966488998 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 18735 | 0.0 | 54.73417 | 1 |
GTATCAA | 35380 | 0.0 | 42.554153 | 1 |
ATCAACG | 44905 | 0.0 | 33.028336 | 3 |
TCAACGC | 45315 | 0.0 | 32.719467 | 4 |
CAACGCA | 46860 | 0.0 | 31.640688 | 5 |
TATCAAC | 48200 | 0.0 | 30.940386 | 2 |
AACGCAG | 48640 | 0.0 | 30.585672 | 6 |
GTACATG | 33520 | 0.0 | 26.946554 | 1 |
ACGCAGA | 55560 | 0.0 | 26.506006 | 7 |
CGCAGAG | 55635 | 0.0 | 26.192242 | 8 |
TACATGG | 33365 | 0.0 | 25.034872 | 2 |
GTGGTAT | 7980 | 0.0 | 24.340496 | 1 |
GCAGAGT | 60215 | 0.0 | 23.681717 | 9 |
ACATGGG | 33855 | 0.0 | 23.382463 | 3 |
TGGTATC | 8610 | 0.0 | 21.347256 | 2 |
AGAGTAC | 55520 | 0.0 | 20.897324 | 10-11 |
CAGAGTA | 58340 | 0.0 | 19.816998 | 10-11 |
GAGTACT | 42650 | 0.0 | 19.814617 | 12-13 |
AGTACTT | 44480 | 0.0 | 19.393305 | 12-13 |
CATGGGT | 9725 | 0.0 | 18.198008 | 4 |