Basic Statistics
Measure | Value |
---|---|
Filename | DRR015355_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9312074 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22894 | 0.2458528572689607 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17556 | 0.18852942964155997 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11926 | 0.12807028810123286 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 12520 | 0.0 | 53.046726 | 1 |
GTATCAA | 24745 | 0.0 | 43.171883 | 1 |
ATCAACG | 30425 | 0.0 | 34.43664 | 3 |
TCAACGC | 30495 | 0.0 | 34.35759 | 4 |
CAACGCA | 31830 | 0.0 | 32.930874 | 5 |
TATCAAC | 32430 | 0.0 | 32.349663 | 2 |
AACGCAG | 32890 | 0.0 | 31.911053 | 6 |
ACGCAGA | 38430 | 0.0 | 27.085884 | 7 |
CGCAGAG | 38330 | 0.0 | 26.954775 | 8 |
GTACATG | 25105 | 0.0 | 25.982286 | 1 |
TACATGG | 24965 | 0.0 | 24.528496 | 2 |
GCAGAGT | 42120 | 0.0 | 24.208965 | 9 |
ACATGGG | 25210 | 0.0 | 23.261486 | 3 |
GTGGTAT | 6210 | 0.0 | 20.713764 | 1 |
AGAGTAC | 38740 | 0.0 | 20.692854 | 10-11 |
GAGTACT | 28520 | 0.0 | 19.595568 | 12-13 |
CAGAGTA | 41435 | 0.0 | 19.319498 | 10-11 |
AGTACTT | 29820 | 0.0 | 18.893917 | 12-13 |
TGGTATC | 6215 | 0.0 | 18.812626 | 2 |
CATGGGG | 16430 | 0.0 | 18.441408 | 4 |