Basic Statistics
Measure | Value |
---|---|
Filename | DRR015354_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10676557 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19902 | 0.18640840862836214 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16202 | 0.1517530417343344 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14420 | 0.0 | 51.316452 | 1 |
GTATCAA | 26490 | 0.0 | 40.750603 | 1 |
TCAACGC | 31105 | 0.0 | 34.1283 | 4 |
ATCAACG | 31160 | 0.0 | 34.097427 | 3 |
CAACGCA | 32815 | 0.0 | 32.322132 | 5 |
AACGCAG | 33885 | 0.0 | 31.354757 | 6 |
TATCAAC | 34000 | 0.0 | 31.343117 | 2 |
ACGCAGA | 38515 | 0.0 | 27.24329 | 7 |
CGCAGAG | 38585 | 0.0 | 26.863543 | 8 |
GTACATG | 28575 | 0.0 | 26.660637 | 1 |
TACATGG | 28415 | 0.0 | 25.54155 | 2 |
ACATGGG | 29030 | 0.0 | 24.044209 | 3 |
GCAGAGT | 42105 | 0.0 | 23.956171 | 9 |
GAGTACT | 26895 | 0.0 | 20.486036 | 12-13 |
CAGAGTA | 41200 | 0.0 | 20.048616 | 10-11 |
AGAGTAC | 37960 | 0.0 | 19.842133 | 10-11 |
CATGGGG | 18980 | 0.0 | 19.466593 | 4 |
GAGTACA | 21225 | 0.0 | 18.95422 | 1 |
GTACTTT | 29395 | 0.0 | 18.449392 | 14-15 |
AGTACTT | 28165 | 0.0 | 18.019604 | 12-13 |