Basic Statistics
Measure | Value |
---|---|
Filename | DRR015344_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11644292 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29271 | 0.2513763825228704 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22906 | 0.19671440736800488 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17368 | 0.1491546244288618 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 16280 | 0.0 | 54.691353 | 1 |
GTATCAA | 31425 | 0.0 | 42.282284 | 1 |
ATCAACG | 39445 | 0.0 | 33.134117 | 3 |
TCAACGC | 39640 | 0.0 | 33.00555 | 4 |
CAACGCA | 41345 | 0.0 | 31.65546 | 5 |
TATCAAC | 42225 | 0.0 | 31.14603 | 2 |
AACGCAG | 42775 | 0.0 | 30.607826 | 6 |
GTACATG | 32130 | 0.0 | 29.415232 | 1 |
TACATGG | 32470 | 0.0 | 27.669996 | 2 |
ACGCAGA | 49140 | 0.0 | 26.384048 | 7 |
ACATGGG | 32930 | 0.0 | 26.192581 | 3 |
CGCAGAG | 49520 | 0.0 | 25.970297 | 8 |
CATGGGT | 11260 | 0.0 | 23.59425 | 4 |
GCAGAGT | 53550 | 0.0 | 23.425922 | 9 |
AGAGTAC | 49780 | 0.0 | 20.573353 | 10-11 |
GTGGTAT | 7465 | 0.0 | 19.980722 | 1 |
GAGTACT | 38190 | 0.0 | 19.655478 | 12-13 |
CATGGGG | 19180 | 0.0 | 19.615015 | 4 |
CAGAGTA | 52665 | 0.0 | 19.524109 | 10-11 |
AGTACTT | 39570 | 0.0 | 19.108 | 12-13 |