Basic Statistics
Measure | Value |
---|---|
Filename | DRR015336_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9394589 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 28317 | 0.30141818870415726 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22848 | 0.2432038272243735 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16280 | 0.17329124243753505 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 13140 | 0.0 | 55.924282 | 1 |
GTATCAA | 25405 | 0.0 | 41.790836 | 1 |
ATCAACG | 32660 | 0.0 | 32.13654 | 3 |
TCAACGC | 32685 | 0.0 | 32.05628 | 4 |
CAACGCA | 33845 | 0.0 | 30.876932 | 5 |
TATCAAC | 35165 | 0.0 | 30.180748 | 2 |
GTACATG | 29890 | 0.0 | 29.892408 | 1 |
AACGCAG | 35030 | 0.0 | 29.869795 | 6 |
TACATGG | 29185 | 0.0 | 28.907738 | 2 |
ACATGGG | 29870 | 0.0 | 26.776346 | 3 |
ACGCAGA | 40710 | 0.0 | 25.467587 | 7 |
CGCAGAG | 41210 | 0.0 | 25.026117 | 8 |
CATGGGT | 10665 | 0.0 | 23.888828 | 4 |
GCAGAGT | 45065 | 0.0 | 22.516226 | 9 |
CATGGGG | 15300 | 0.0 | 20.844635 | 4 |
GTGGTAT | 5640 | 0.0 | 20.206528 | 1 |
AGAGTAC | 42835 | 0.0 | 20.06107 | 10-11 |
CAGAGTA | 44215 | 0.0 | 19.29601 | 10-11 |
TGGTATC | 5790 | 0.0 | 18.872568 | 2 |
GAGTACA | 21575 | 0.0 | 18.86824 | 1 |