Basic Statistics
Measure | Value |
---|---|
Filename | DRR015332_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9683027 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 33615 | 0.34715383939340455 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 24727 | 0.2553643607520665 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18061 | 0.1865222517710629 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 15340 | 0.0 | 50.607246 | 1 |
GTATCAA | 29990 | 0.0 | 43.365936 | 1 |
ATCAACG | 38235 | 0.0 | 33.768745 | 3 |
TCAACGC | 38335 | 0.0 | 33.645058 | 4 |
CAACGCA | 39510 | 0.0 | 32.63296 | 5 |
TATCAAC | 40490 | 0.0 | 32.079803 | 2 |
AACGCAG | 40820 | 0.0 | 31.74026 | 6 |
ACGCAGA | 47445 | 0.0 | 27.135603 | 7 |
CGCAGAG | 47775 | 0.0 | 26.786287 | 8 |
GCAGAGT | 51035 | 0.0 | 24.660099 | 9 |
GTACATG | 26700 | 0.0 | 24.39745 | 1 |
TACATGG | 26720 | 0.0 | 23.087696 | 2 |
ACATGGG | 27375 | 0.0 | 21.372263 | 3 |
AGAGTAC | 47735 | 0.0 | 21.346634 | 10-11 |
AGTACTT | 37415 | 0.0 | 20.157074 | 12-13 |
GAGTACT | 36645 | 0.0 | 19.62454 | 12-13 |
CAGAGTA | 50380 | 0.0 | 19.525976 | 10-11 |
GTACTTT | 39070 | 0.0 | 18.256876 | 14-15 |
GTGGTAT | 7280 | 0.0 | 17.971071 | 1 |
TATACTG | 4830 | 0.0 | 17.519814 | 5 |