Basic Statistics
Measure | Value |
---|---|
Filename | DRR015306_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 16349664 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 25219 | 0.15424781818146233 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22912 | 0.14013743646352608 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 25825 | 0.0 | 50.096237 | 1 |
GTATCAA | 45690 | 0.0 | 38.265812 | 1 |
ATCAACG | 56210 | 0.0 | 30.63308 | 3 |
TCAACGC | 56990 | 0.0 | 30.213816 | 4 |
TATCAAC | 59225 | 0.0 | 29.260302 | 2 |
CAACGCA | 59575 | 0.0 | 28.887547 | 5 |
AACGCAG | 62890 | 0.0 | 27.393784 | 6 |
GTACATG | 52565 | 0.0 | 25.435398 | 1 |
ACGCAGA | 70335 | 0.0 | 23.983168 | 7 |
TACATGG | 53225 | 0.0 | 23.95964 | 2 |
CGCAGAG | 70180 | 0.0 | 23.71851 | 8 |
GTGGTAT | 12930 | 0.0 | 22.477564 | 1 |
ACATGGG | 56100 | 0.0 | 22.032568 | 3 |
GCAGAGT | 75185 | 0.0 | 21.43172 | 9 |
TGGTATC | 13480 | 0.0 | 20.486683 | 2 |
AGAGTAC | 67495 | 0.0 | 19.122383 | 10-11 |
CATGGGG | 38220 | 0.0 | 18.877775 | 4 |
CAGAGTA | 71975 | 0.0 | 18.86445 | 10-11 |
GAGTACA | 39160 | 0.0 | 18.810246 | 1 |
GAGTACT | 44810 | 0.0 | 18.790522 | 12-13 |