Basic Statistics
Measure | Value |
---|---|
Filename | DRR015292_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8428660 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31043 | 0.3683029093592576 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 24687 | 0.2928935323052538 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14682 | 0.17419138985319138 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 18580 | 0.0 | 55.57414 | 1 |
GTATCAA | 36070 | 0.0 | 43.451572 | 1 |
ATCAACG | 46155 | 0.0 | 33.5928 | 3 |
TCAACGC | 46435 | 0.0 | 33.400433 | 4 |
TATCAAC | 48245 | 0.0 | 32.211426 | 2 |
CAACGCA | 49235 | 0.0 | 31.519808 | 5 |
AACGCAG | 50970 | 0.0 | 30.490986 | 6 |
ACGCAGA | 55790 | 0.0 | 27.62125 | 7 |
CGCAGAG | 56835 | 0.0 | 26.938236 | 8 |
GTGGTAT | 7605 | 0.0 | 25.394142 | 1 |
GCAGAGT | 59420 | 0.0 | 25.178062 | 9 |
TGGTATC | 7730 | 0.0 | 24.223835 | 2 |
GTACATG | 41385 | 0.0 | 24.19088 | 1 |
TACATGG | 40105 | 0.0 | 23.447239 | 2 |
TATAACG | 800 | 0.0 | 22.779833 | 2 |
TACCTGG | 6585 | 0.0 | 21.793919 | 2 |
ACATGGG | 42615 | 0.0 | 21.30459 | 3 |
GAGTACT | 35390 | 0.0 | 21.188229 | 12-13 |
AGTACTT | 35630 | 0.0 | 21.045506 | 12-13 |
AGAGTAC | 56110 | 0.0 | 21.023212 | 10-11 |