Basic Statistics
Measure | Value |
---|---|
Filename | DRR015276_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6490836 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20878 | 0.3216534819243623 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17990 | 0.2771599837062591 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10470 | 0.16130433737657215 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGT | 7372 | 0.11357550860936864 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 16900 | 0.0 | 51.816307 | 1 |
CAACGCG | 620 | 0.0 | 50.341183 | 4 |
CGTAGAG | 910 | 0.0 | 43.88449 | 8 |
ACGCGGA | 725 | 0.0 | 41.78518 | 6 |
GTATCAA | 31245 | 0.0 | 41.522717 | 1 |
AACGCCG | 690 | 0.0 | 39.248154 | 5 |
AACGCGG | 820 | 0.0 | 38.623497 | 5 |
AACGGAG | 1225 | 0.0 | 38.219093 | 6 |
CAACGCT | 775 | 0.0 | 37.90395 | 4 |
AACGAAG | 1720 | 0.0 | 37.36078 | 6 |
ATCAACG | 38440 | 0.0 | 33.463127 | 3 |
GCGGAGT | 920 | 0.0 | 33.428753 | 8 |
CAACGAA | 2020 | 0.0 | 31.812147 | 5 |
TATCAAC | 41330 | 0.0 | 31.241138 | 2 |
TCAACGC | 37155 | 0.0 | 30.710724 | 4 |
CAACGCA | 37875 | 0.0 | 30.127619 | 5 |
TCAACGG | 1580 | 0.0 | 29.3407 | 4 |
AACGCAG | 39190 | 0.0 | 29.163551 | 6 |
ACGAAGA | 2245 | 0.0 | 29.03276 | 7 |
ACGGAGA | 1680 | 0.0 | 28.141308 | 7 |