Basic Statistics
Measure | Value |
---|---|
Filename | DRR015269_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9162604 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 34216 | 0.3734309591465483 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29398 | 0.32084765422580747 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16462 | 0.17966508210984564 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 27495 | 0.0 | 46.765377 | 1 |
GTATCAA | 46930 | 0.0 | 37.406757 | 1 |
ATCAACG | 59050 | 0.0 | 29.53439 | 3 |
TCAACGC | 59315 | 0.0 | 29.491194 | 4 |
TATCAAC | 59645 | 0.0 | 29.28647 | 2 |
CAACGCA | 62340 | 0.0 | 28.103966 | 5 |
AACGCAG | 64075 | 0.0 | 27.385448 | 6 |
ACGCAGA | 70835 | 0.0 | 24.439056 | 7 |
CGCAGAG | 71580 | 0.0 | 23.988184 | 8 |
GTACATG | 49200 | 0.0 | 23.620258 | 1 |
TACATGG | 47445 | 0.0 | 23.374004 | 2 |
GCAGAGT | 74430 | 0.0 | 22.545307 | 9 |
TATAACG | 715 | 0.0 | 22.348999 | 2 |
TACCTGG | 6780 | 0.0 | 22.019838 | 2 |
ACATGGG | 49545 | 0.0 | 21.733883 | 3 |
GAGTACT | 38625 | 0.0 | 21.716406 | 12-13 |
GTGGTAT | 13665 | 0.0 | 20.542667 | 1 |
GTACTTT | 40415 | 0.0 | 20.529129 | 14-15 |
AGTACTT | 38890 | 0.0 | 20.345808 | 12-13 |
AGAGTAC | 65265 | 0.0 | 19.62159 | 10-11 |